protein_metamorphisms_is
latest
Information System
UniProt Module
PDB Module
ORM Model
Operations
CDHit Module
Structural Alignment Module
protein_metamorphisms_is
Index
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Index
A
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
A
Accession (class in protein_metamorphisms_is.sql.model)
accession_code (protein_metamorphisms_is.sql.model.Accession attribute)
accessions (protein_metamorphisms_is.sql.model.Protein attribute)
align_task() (in module protein_metamorphisms_is.operations.structural_alignment_tasks.combinatorial_extension)
(in module protein_metamorphisms_is.operations.structural_alignment_tasks.fatcat)
(in module protein_metamorphisms_is.operations.structural_alignment_tasks.universal)
alignment_type_id (protein_metamorphisms_is.sql.model.StructuralAlignmentQueue attribute)
annotation_update_date (protein_metamorphisms_is.sql.model.Protein attribute)
C
category (protein_metamorphisms_is.sql.model.GOTerm attribute)
CDHit (class in protein_metamorphisms_is.operations.cdhit)
ce_rms (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
chains (protein_metamorphisms_is.sql.model.PDBChains attribute)
check_empty_queue() (protein_metamorphisms_is.operations.structural_alignment.StructuralAlignmentManager method)
Cluster (class in protein_metamorphisms_is.sql.model)
cluster() (protein_metamorphisms_is.operations.cdhit.CDHit method)
,
[1]
cluster_entry_id (protein_metamorphisms_is.sql.model.StructuralAlignmentQueue attribute)
(protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
cluster_id (protein_metamorphisms_is.sql.model.Cluster attribute)
comments (protein_metamorphisms_is.sql.model.Protein attribute)
conf (protein_metamorphisms_is.operations.cdhit.CDHit attribute)
(protein_metamorphisms_is.operations.structural_alignment.StructuralAlignmentManager attribute)
create_fasta() (protein_metamorphisms_is.operations.cdhit.CDHit method)
,
[1]
created_at (protein_metamorphisms_is.sql.model.Accession attribute)
(protein_metamorphisms_is.sql.model.PDBReference attribute)
(protein_metamorphisms_is.sql.model.Protein attribute)
(protein_metamorphisms_is.sql.model.StructuralAlignmentQueue attribute)
created_date (protein_metamorphisms_is.sql.model.Protein attribute)
D
data_class (protein_metamorphisms_is.sql.model.Protein attribute)
description (protein_metamorphisms_is.sql.model.GOTerm attribute)
(protein_metamorphisms_is.sql.model.Protein attribute)
(protein_metamorphisms_is.sql.model.StructuralAlignmentType attribute)
(protein_metamorphisms_is.sql.model.StructuralComplexityLevel attribute)
disappeared (protein_metamorphisms_is.sql.model.Accession attribute)
(protein_metamorphisms_is.sql.model.Protein attribute)
download_and_process_pdb_structure() (protein_metamorphisms_is.information_system.pdb.PDBExtractor method)
download_pdb_structures() (protein_metamorphisms_is.information_system.pdb.PDBExtractor method)
download_record() (protein_metamorphisms_is.information_system.uniprot.UniProtExtractor method)
E
entry_name (protein_metamorphisms_is.sql.model.Protein attribute)
error_message (protein_metamorphisms_is.sql.model.StructuralAlignmentQueue attribute)
execute_aligns() (protein_metamorphisms_is.operations.structural_alignment.StructuralAlignmentManager method)
extract_entries() (protein_metamorphisms_is.information_system.uniprot.UniProtExtractor method)
F
fc_align_len (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
fc_identity (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
fc_rms (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
fc_score (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
fc_similarity (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
fetch_queue_items() (protein_metamorphisms_is.operations.structural_alignment.StructuralAlignmentManager method)
fetch_tasks_info() (protein_metamorphisms_is.operations.structural_alignment.StructuralAlignmentManager method)
G
gene_name (protein_metamorphisms_is.sql.model.Protein attribute)
get_update_queue() (protein_metamorphisms_is.operations.structural_alignment.StructuralAlignmentManager method)
go_id (protein_metamorphisms_is.sql.model.GOTerm attribute)
go_terms (protein_metamorphisms_is.sql.model.Protein attribute)
GOTerm (class in protein_metamorphisms_is.sql.model)
H
host_organism (protein_metamorphisms_is.sql.model.Protein attribute)
host_taxonomy_id (protein_metamorphisms_is.sql.model.Protein attribute)
I
id (protein_metamorphisms_is.sql.model.Accession attribute)
(protein_metamorphisms_is.sql.model.Cluster attribute)
(protein_metamorphisms_is.sql.model.GOTerm attribute)
(protein_metamorphisms_is.sql.model.PDBChains attribute)
(protein_metamorphisms_is.sql.model.PDBReference attribute)
(protein_metamorphisms_is.sql.model.StructuralAlignmentQueue attribute)
(protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
(protein_metamorphisms_is.sql.model.StructuralAlignmentType attribute)
(protein_metamorphisms_is.sql.model.StructuralComplexityLevel attribute)
identity (protein_metamorphisms_is.sql.model.Cluster attribute)
insert_results() (protein_metamorphisms_is.operations.structural_alignment.StructuralAlignmentManager method)
is_representative (protein_metamorphisms_is.sql.model.Cluster attribute)
K
keywords (protein_metamorphisms_is.sql.model.Protein attribute)
L
load_access_codes() (protein_metamorphisms_is.information_system.uniprot.UniProtExtractor method)
load_chains() (protein_metamorphisms_is.operations.cdhit.CDHit method)
,
[1]
load_pdb_ids() (protein_metamorphisms_is.information_system.pdb.PDBExtractor method)
M
method (protein_metamorphisms_is.sql.model.PDBReference attribute)
model (protein_metamorphisms_is.sql.model.PDBChains attribute)
molecule_type (protein_metamorphisms_is.sql.model.Protein attribute)
N
name (protein_metamorphisms_is.sql.model.StructuralAlignmentType attribute)
(protein_metamorphisms_is.sql.model.StructuralComplexityLevel attribute)
O
organelle (protein_metamorphisms_is.sql.model.Protein attribute)
organism (protein_metamorphisms_is.sql.model.Protein attribute)
organism_classification (protein_metamorphisms_is.sql.model.Protein attribute)
P
pdb_chain_id (protein_metamorphisms_is.sql.model.Cluster attribute)
pdb_chains (protein_metamorphisms_is.sql.model.PDBReference attribute)
pdb_id (protein_metamorphisms_is.sql.model.PDBReference attribute)
pdb_reference (protein_metamorphisms_is.sql.model.PDBChains attribute)
pdb_reference_id (protein_metamorphisms_is.sql.model.PDBChains attribute)
pdb_references (protein_metamorphisms_is.sql.model.Protein attribute)
PDBChains (class in protein_metamorphisms_is.sql.model)
PDBExtractor (class in protein_metamorphisms_is.information_system.pdb)
PDBReference (class in protein_metamorphisms_is.sql.model)
populate_pdb_chains() (protein_metamorphisms_is.information_system.pdb.PDBExtractor method)
primary (protein_metamorphisms_is.sql.model.Accession attribute)
Protein (class in protein_metamorphisms_is.sql.model)
protein (protein_metamorphisms_is.sql.model.Accession attribute)
(protein_metamorphisms_is.sql.model.GOTerm attribute)
(protein_metamorphisms_is.sql.model.PDBReference attribute)
protein_entry_name (protein_metamorphisms_is.sql.model.Accession attribute)
(protein_metamorphisms_is.sql.model.GOTerm attribute)
(protein_metamorphisms_is.sql.model.PDBReference attribute)
protein_existence (protein_metamorphisms_is.sql.model.Protein attribute)
R
resolution (protein_metamorphisms_is.sql.model.PDBReference attribute)
retry_count (protein_metamorphisms_is.sql.model.StructuralAlignmentQueue attribute)
S
seqinfo (protein_metamorphisms_is.sql.model.Protein attribute)
sequence (protein_metamorphisms_is.sql.model.PDBChains attribute)
(protein_metamorphisms_is.sql.model.Protein attribute)
sequence_length (protein_metamorphisms_is.sql.model.Cluster attribute)
(protein_metamorphisms_is.sql.model.Protein attribute)
sequence_update_date (protein_metamorphisms_is.sql.model.Protein attribute)
start() (protein_metamorphisms_is.information_system.pdb.PDBExtractor method)
(protein_metamorphisms_is.information_system.uniprot.UniProtExtractor method)
(protein_metamorphisms_is.operations.cdhit.CDHit method)
,
[1]
(protein_metamorphisms_is.operations.structural_alignment.StructuralAlignmentManager method)
state (protein_metamorphisms_is.sql.model.StructuralAlignmentQueue attribute)
store_entry() (protein_metamorphisms_is.information_system.uniprot.UniProtExtractor method)
StructuralAlignmentManager (class in protein_metamorphisms_is.operations.structural_alignment)
StructuralAlignmentQueue (class in protein_metamorphisms_is.sql.model)
StructuralAlignmentResults (class in protein_metamorphisms_is.sql.model)
StructuralAlignmentType (class in protein_metamorphisms_is.sql.model)
StructuralComplexityLevel (class in protein_metamorphisms_is.sql.model)
T
task_name (protein_metamorphisms_is.sql.model.StructuralAlignmentType attribute)
taxonomy_id (protein_metamorphisms_is.sql.model.Protein attribute)
tm_rms (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
tm_score_chain_1 (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
tm_score_chain_2 (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
tm_seq_id (protein_metamorphisms_is.sql.model.StructuralAlignmentResults attribute)
U
uniprot_chains (protein_metamorphisms_is.sql.model.PDBReference attribute)
UniProtExtractor (class in protein_metamorphisms_is.information_system.uniprot)
updated_at (protein_metamorphisms_is.sql.model.Accession attribute)
(protein_metamorphisms_is.sql.model.PDBReference attribute)
(protein_metamorphisms_is.sql.model.Protein attribute)
(protein_metamorphisms_is.sql.model.StructuralAlignmentQueue attribute)
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